Lab Members

.js-id-Current-Lab-Members

Data Science for Biologists

Materials for Fall 2020 BIOL01301.

Introduction to Evolution and Scientific Inquiry

Materials for Spring 2020 BIOL01104 Section 4.

A collection of materials to learn bioinformatics at home

A collection of materials to learn bioinformatics at home

An Introduction to Programming for Bioscientists: A Python-Based Primer

Learn concepts in programming through the lens of Python with this primer from PLOS Computational Biology.

Big Book of R

A comprehensive collection of what might be all the free online R books ever written, compiled by Oscar Baruffa

Biostatistics

Materials for BIO5312, taught Fall 2017 at Temple University.

Data Visualization: A practical introduction

Master ggplot2 with this excellent book by Kieran Healy.

Functional Genomics Workshop

Materials for 2017 Workshop at Lacawac Sanctuary, focusing on basic UNIX skills and regular expressions.

Fundamentals of Data Visualization

Learn how to design compelling figures with this book by Claus Wilke.

Happy Git and GitHub for the R user

Learn to interact with github, geared towards R users.

Interactive UNIX Bootcamp

Free interactive guide for getting started with UNIX (command line).

Introduction to Github

Interactive lesson to introduce fundamental concepts in version control with git (requires a free account with https://github.com).

Introduction to LaTeX

Learn about this powerful markup language with free lessons from Overleaf.

Introduction to Markdown

Learn about this more-enjoyable-than-LaTeX markup language.

Introduction to Python

Materials for UT Austin’s Big Data in Biology 2018 python short course.

Learning R resources

A fantastic set of R resources compiled by Joscelin Rocha

learnlatex.org

A website of short lessons that comprise a fantastic free introduction to LaTeX.

Modern Statistics for Modern Biology

An online book for hands-on application of statistical analyses to modern biological data by Susan Holmes and Wolfgang Huber.

Practical Computing for Biologists

Highly-recommended book for basic computing skills by Casey Dunn and Steve Haddock.

R Cheatsheets

Free cheatsheets for R/tidyverse courtesy of RStudio.

R for Data Science

Learn the ‘tidyverse’ with this excellent book by Garrett Grolemund and Hadley Wickham.

R for Data Science

Learn R with free resoures from RStudio Education.

RStudio Primers

Free interactive lessons in R/tidyverse created by RStudio (requires a free account on rstudio.cloud.

Software Carpentry Homepage

Free lessons from the awesome folks at Software Carpentry on topics including command line, Python, R, and version control with github.

UNIX Tutorial for Beginners

Free lessons online for getting started with UNIX (command line).

Chante Bethell (2018 - 2019)

Chante is a former undergraduate research student who graduated in May 2019 with her BS in Bioinformatics from the department of …

Francis K. Picone (2019 - 2020)

Frankie is a former undergraduate research student who graduated in May 2020 with his BS in Biological Sciences from the Department of …

Jake Mihalecz (Fall 2020 - Present)

Jake is an undergraduate student majoring in Biological Sciences at Rowan University. He is working on a research project to study …

John (“Jake”) Kovaleski (Fall 2020 - Present)

Jake is an undergraduate student majoring in Biological Sciences at Rowan University, and he is a member of the Honors College. He is …

Judith Evans (Spring 2021 - Present)

Judith is an undergraduate student majoring in Biological Sciences at Rowan University, with two minors in Spanish and Chemistry. She …

Madeline (“Maddie”) Greene (Fall 2020-Present)

Maddie is an undergraduate student majoring in Biological Sciences at Rowan University, with two minors in Spanish and Sustainability …

Molly Miraglia (2019 - 2020)

Molly is a former undergraduate research student who graduated in December 2020 with her BS in Bioinformatics from the department of …

Naman Srivastava (2019)

Naman is an undergraduate student majoring in Biological Sciences at Rowan University. He conducted a research project in collaboration …

Rachael Wilson (Fall 2020 - Present)

Rachael is an undergraduate student majoring in Biological Sciences at Rowan University with a minor in Psychology. She is working on a …

YOU?!

We are always interested in recruiting motivated and enthusiastic new undergraduate students for research. Please note that, at this …

dragon

Shiny application for interactive analysis of the mineral-chemistry network in deep time.

evolfoRces

Shiny application for teaching simple population genetics using simulations.

phyphy

Python library for facilitating and parsing standard HyPhy analyses.

pyvolve

Python library for simulating sequences along phylogenies using continuous time Markov models.

Software

Developed for research and education

.js-id-All-Software

Data Science for Biologists

Materials for Fall 2020 BIOL01301.

Introduction to Evolution and Scientific Inquiry

Materials for Spring 2020 BIOL01104 Section 4.

A collection of materials to learn bioinformatics at home

A collection of materials to learn bioinformatics at home

An Introduction to Programming for Bioscientists: A Python-Based Primer

Learn concepts in programming through the lens of Python with this primer from PLOS Computational Biology.

Big Book of R

A comprehensive collection of what might be all the free online R books ever written, compiled by Oscar Baruffa

Biostatistics

Materials for BIO5312, taught Fall 2017 at Temple University.

Data Visualization: A practical introduction

Master ggplot2 with this excellent book by Kieran Healy.

Functional Genomics Workshop

Materials for 2017 Workshop at Lacawac Sanctuary, focusing on basic UNIX skills and regular expressions.

Fundamentals of Data Visualization

Learn how to design compelling figures with this book by Claus Wilke.

Happy Git and GitHub for the R user

Learn to interact with github, geared towards R users.

Interactive UNIX Bootcamp

Free interactive guide for getting started with UNIX (command line).

Introduction to Github

Interactive lesson to introduce fundamental concepts in version control with git (requires a free account with https://github.com).

Introduction to LaTeX

Learn about this powerful markup language with free lessons from Overleaf.

Introduction to Markdown

Learn about this more-enjoyable-than-LaTeX markup language.

Introduction to Python

Materials for UT Austin’s Big Data in Biology 2018 python short course.

Learning R resources

A fantastic set of R resources compiled by Joscelin Rocha

learnlatex.org

A website of short lessons that comprise a fantastic free introduction to LaTeX.

Modern Statistics for Modern Biology

An online book for hands-on application of statistical analyses to modern biological data by Susan Holmes and Wolfgang Huber.

Practical Computing for Biologists

Highly-recommended book for basic computing skills by Casey Dunn and Steve Haddock.

R Cheatsheets

Free cheatsheets for R/tidyverse courtesy of RStudio.

R for Data Science

Learn the ‘tidyverse’ with this excellent book by Garrett Grolemund and Hadley Wickham.

R for Data Science

Learn R with free resoures from RStudio Education.

RStudio Primers

Free interactive lessons in R/tidyverse created by RStudio (requires a free account on rstudio.cloud.

Software Carpentry Homepage

Free lessons from the awesome folks at Software Carpentry on topics including command line, Python, R, and version control with github.

UNIX Tutorial for Beginners

Free lessons online for getting started with UNIX (command line).

Chante Bethell (2018 - 2019)

Chante is a former undergraduate research student who graduated in May 2019 with her BS in Bioinformatics from the department of …

Francis K. Picone (2019 - 2020)

Frankie is a former undergraduate research student who graduated in May 2020 with his BS in Biological Sciences from the Department of …

Jake Mihalecz (Fall 2020 - Present)

Jake is an undergraduate student majoring in Biological Sciences at Rowan University. He is working on a research project to study …

John (“Jake”) Kovaleski (Fall 2020 - Present)

Jake is an undergraduate student majoring in Biological Sciences at Rowan University, and he is a member of the Honors College. He is …

Judith Evans (Spring 2021 - Present)

Judith is an undergraduate student majoring in Biological Sciences at Rowan University, with two minors in Spanish and Chemistry. She …

Madeline (“Maddie”) Greene (Fall 2020-Present)

Maddie is an undergraduate student majoring in Biological Sciences at Rowan University, with two minors in Spanish and Sustainability …

Molly Miraglia (2019 - 2020)

Molly is a former undergraduate research student who graduated in December 2020 with her BS in Bioinformatics from the department of …

Naman Srivastava (2019)

Naman is an undergraduate student majoring in Biological Sciences at Rowan University. He conducted a research project in collaboration …

Rachael Wilson (Fall 2020 - Present)

Rachael is an undergraduate student majoring in Biological Sciences at Rowan University with a minor in Psychology. She is working on a …

YOU?!

We are always interested in recruiting motivated and enthusiastic new undergraduate students for research. Please note that, at this …

dragon

Shiny application for interactive analysis of the mineral-chemistry network in deep time.

evolfoRces

Shiny application for teaching simple population genetics using simulations.

phyphy

Python library for facilitating and parsing standard HyPhy analyses.

pyvolve

Python library for simulating sequences along phylogenies using continuous time Markov models.

Courses

Courses I have developed and taught

.js-id-Current-Courses

Materials for Fall 2020 BIOL01301.

Materials for Spring 2020 BIOL01104 Section 4.

A collection of materials to learn bioinformatics at home

Learn concepts in programming through the lens of Python with this primer from PLOS Computational Biology.

A comprehensive collection of what might be all the free online R books ever written, compiled by Oscar Baruffa

Materials for BIO5312, taught Fall 2017 at Temple University.

Master ggplot2 with this excellent book by Kieran Healy.

Materials for 2017 Workshop at Lacawac Sanctuary, focusing on basic UNIX skills and regular expressions.

Learn how to design compelling figures with this book by Claus Wilke.

Learn to interact with github, geared towards R users.

Free interactive guide for getting started with UNIX (command line).

Interactive lesson to introduce fundamental concepts in version control with git (requires a free account with https://github.com).

Learn about this powerful markup language with free lessons from Overleaf.

Learn about this more-enjoyable-than-LaTeX markup language.

Materials for UT Austin’s Big Data in Biology 2018 python short course.

A fantastic set of R resources compiled by Joscelin Rocha

A website of short lessons that comprise a fantastic free introduction to LaTeX.

An online book for hands-on application of statistical analyses to modern biological data by Susan Holmes and Wolfgang Huber.

Highly-recommended book for basic computing skills by Casey Dunn and Steve Haddock.

Free cheatsheets for R/tidyverse courtesy of RStudio.

Learn the ‘tidyverse’ with this excellent book by Garrett Grolemund and Hadley Wickham.

Learn R with free resoures from RStudio Education.

Free interactive lessons in R/tidyverse created by RStudio (requires a free account on rstudio.cloud.

Free lessons from the awesome folks at Software Carpentry on topics including command line, Python, R, and version control with github.

Free lessons online for getting started with UNIX (command line).

We are always interested in recruiting motivated and enthusiastic new undergraduate students for research. Please note that, at this …

Shiny application for interactive analysis of the mineral-chemistry network in deep time.

Shiny application for teaching simple population genetics using simulations.

Python library for facilitating and parsing standard HyPhy analyses.

Python library for simulating sequences along phylogenies using continuous time Markov models.

Resources

Third-party resources for learning fundamental skills in scientific and biological computing

.js-id-All-Resources

Data Science for Biologists

Materials for Fall 2020 BIOL01301.

Introduction to Evolution and Scientific Inquiry

Materials for Spring 2020 BIOL01104 Section 4.

A collection of materials to learn bioinformatics at home

A collection of materials to learn bioinformatics at home

An Introduction to Programming for Bioscientists: A Python-Based Primer

Learn concepts in programming through the lens of Python with this primer from PLOS Computational Biology.

Big Book of R

A comprehensive collection of what might be all the free online R books ever written, compiled by Oscar Baruffa

Biostatistics

Materials for BIO5312, taught Fall 2017 at Temple University.

Data Visualization: A practical introduction

Master ggplot2 with this excellent book by Kieran Healy.

Functional Genomics Workshop

Materials for 2017 Workshop at Lacawac Sanctuary, focusing on basic UNIX skills and regular expressions.

Fundamentals of Data Visualization

Learn how to design compelling figures with this book by Claus Wilke.

Happy Git and GitHub for the R user

Learn to interact with github, geared towards R users.

Interactive UNIX Bootcamp

Free interactive guide for getting started with UNIX (command line).

Introduction to Github

Interactive lesson to introduce fundamental concepts in version control with git (requires a free account with https://github.com).

Introduction to LaTeX

Learn about this powerful markup language with free lessons from Overleaf.

Introduction to Markdown

Learn about this more-enjoyable-than-LaTeX markup language.

Introduction to Python

Materials for UT Austin’s Big Data in Biology 2018 python short course.

Learning R resources

A fantastic set of R resources compiled by Joscelin Rocha

learnlatex.org

A website of short lessons that comprise a fantastic free introduction to LaTeX.

Modern Statistics for Modern Biology

An online book for hands-on application of statistical analyses to modern biological data by Susan Holmes and Wolfgang Huber.

Practical Computing for Biologists

Highly-recommended book for basic computing skills by Casey Dunn and Steve Haddock.

R Cheatsheets

Free cheatsheets for R/tidyverse courtesy of RStudio.

R for Data Science

Learn the ‘tidyverse’ with this excellent book by Garrett Grolemund and Hadley Wickham.

R for Data Science

Learn R with free resoures from RStudio Education.

RStudio Primers

Free interactive lessons in R/tidyverse created by RStudio (requires a free account on rstudio.cloud.

Software Carpentry Homepage

Free lessons from the awesome folks at Software Carpentry on topics including command line, Python, R, and version control with github.

UNIX Tutorial for Beginners

Free lessons online for getting started with UNIX (command line).

Chante Bethell (2018 - 2019)

Chante is a former undergraduate research student who graduated in May 2019 with her BS in Bioinformatics from the department of …

Francis K. Picone (2019 - 2020)

Frankie is a former undergraduate research student who graduated in May 2020 with his BS in Biological Sciences from the Department of …

Jake Mihalecz (Fall 2020 - Present)

Jake is an undergraduate student majoring in Biological Sciences at Rowan University. He is working on a research project to study …

John (“Jake”) Kovaleski (Fall 2020 - Present)

Jake is an undergraduate student majoring in Biological Sciences at Rowan University, and he is a member of the Honors College. He is …

Judith Evans (Spring 2021 - Present)

Judith is an undergraduate student majoring in Biological Sciences at Rowan University, with two minors in Spanish and Chemistry. She …

Madeline (“Maddie”) Greene (Fall 2020-Present)

Maddie is an undergraduate student majoring in Biological Sciences at Rowan University, with two minors in Spanish and Sustainability …

Molly Miraglia (2019 - 2020)

Molly is a former undergraduate research student who graduated in December 2020 with her BS in Bioinformatics from the department of …

Naman Srivastava (2019)

Naman is an undergraduate student majoring in Biological Sciences at Rowan University. He conducted a research project in collaboration …

Rachael Wilson (Fall 2020 - Present)

Rachael is an undergraduate student majoring in Biological Sciences at Rowan University with a minor in Psychology. She is working on a …

YOU?!

We are always interested in recruiting motivated and enthusiastic new undergraduate students for research. Please note that, at this …

dragon

Shiny application for interactive analysis of the mineral-chemistry network in deep time.

evolfoRces

Shiny application for teaching simple population genetics using simulations.

phyphy

Python library for facilitating and parsing standard HyPhy analyses.

pyvolve

Python library for simulating sequences along phylogenies using continuous time Markov models.

Contact

  • Please note: I am working fully remotely during COVID-19 and will not be in my office.
    201D Science Hall, 201 Mullica Hill Road, Glassboro, NJ 08028 USA